PhytophthoraV1, Main, Exploration, bibRecord, 000762

Genome-wide analysis of dirigent gene family in pepper (Capsicum annuum L.) and characterization of CaDIR7 in biotic and abiotic stresses.

Identifieur interne : 000762 ( Main/Exploration ); précédent : 000761; suivant : 000763

Genome-wide analysis of dirigent gene family in pepper (Capsicum annuum L.) and characterization of CaDIR7 in biotic and abiotic stresses.

Auteurs : Abid Khan [République populaire de Chine] ; Ru-Jian Li [République populaire de Chine] ; Jian-Tian Sun [République populaire de Chine] ; Fang Ma [République populaire de Chine] ; Huai-Xia Zhang [République populaire de Chine] ; Jing-Hao Jin [République populaire de Chine] ; Muhammad Ali [République populaire de Chine] ; Saeed Ul Haq [République populaire de Chine] ; Jun-E Wang [République populaire de Chine] ; Zhen-Hui Gong [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2018.

RBID : pubmed:29615685

Descripteurs français

KwdFr :
- Annotation de séquence moléculaire (MeSH), Capsicum (génétique), Capsicum (physiologie), Chlorophylle (métabolisme), Duplication de gène (MeSH), Génomique (MeSH), Modèles moléculaires (MeSH), Phylogenèse (MeSH), Protéines végétales (composition chimique), Protéines végétales (génétique), Protéines végétales (métabolisme), Régions promotrices (génétique) (génétique), Régulation de l'expression des gènes végétaux (MeSH), Stress physiologique (génétique), Structure tertiaire des protéines (MeSH), Séquence conservée (MeSH), Séquence d'acides aminés (MeSH).
MESH :
- composition chimique : Protéines végétales.
- génétique : Capsicum, Protéines végétales, Régions promotrices (génétique), Stress physiologique.
- métabolisme : Chlorophylle, Protéines végétales.
- physiologie : Capsicum.
- Annotation de séquence moléculaire, Duplication de gène, Génomique, Modèles moléculaires, Phylogenèse, Régulation de l'expression des gènes végétaux, Structure tertiaire des protéines, Séquence conservée, Séquence d'acides aminés.

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Capsicum (genetics), Capsicum (physiology), Chlorophyll (metabolism), Conserved Sequence (MeSH), Gene Duplication (MeSH), Gene Expression Regulation, Plant (MeSH), Genomics (MeSH), Models, Molecular (MeSH), Molecular Sequence Annotation (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Promoter Regions, Genetic (genetics), Protein Structure, Tertiary (MeSH), Stress, Physiological (genetics).
MESH :
- chemical , chemistry : Plant Proteins.
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Chlorophyll, Plant Proteins.
- genetics : Capsicum, Promoter Regions, Genetic, Stress, Physiological.
- physiology : Capsicum.
- Amino Acid Sequence, Conserved Sequence, Gene Duplication, Gene Expression Regulation, Plant, Genomics, Models, Molecular, Molecular Sequence Annotation, Phylogeny, Protein Structure, Tertiary.

Abstract

The dirigent (DIR and DIR-like) proteins involved in lignification, play a pivotal role against biotic and abiotic stresses in plants. However, no information is available about DIR gene family in pepper (Capsicum annuum L.). In this study, 24 putative dirigent genes (CaDIRs) were identified, their gene structure, genome location, gene duplication and phylogenetic relationship were elucidated. Tissue-specific expression analysis displayed the highest transcription levels in flower, stem and leaf. Some CaDIRs were up-regulated by virulent (CaDIR2, 3, 6, 7, 11, 14, 16, 22 and 23) and avirulent (CaDIR3, 5, 7, 16, 20, 22, 23 and 24) Phytophthora capsici strains, as well as by Methyl jasmonate, salicylic acid, NaCl and mannitol stresses. Acid-soluble lignin content increased (103.21%) after P. capsici inoculation (48-hour). Silencing of CaDIR7 weakened plant defense by reducing (~50%) root activity and made plants more susceptible (35.7%) to P. capsici and NaCl (300 mM). Leaf discs of the CaDIR7:silenced plants exposed to NaCl and mannitol (300 mM each), exhibited a significant decrease (56.25% and 48% respectively) in the chlorophyll content. These results suggested that CaDIR7 is involved in pepper defense response against pathogen and abiotic stresses and the study will provide basic insights for future research regarding CaDIRs.

DOI: 10.1038/s41598-018-23761-0
PubMed: 29615685
PubMed Central: PMC5883049

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Capsicum (genetics)</term>
<term>Capsicum (physiology)</term>
<term>Chlorophyll (metabolism)</term>
<term>Conserved Sequence (MeSH)</term>
<term>Gene Duplication (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genomics (MeSH)</term>
<term>Models, Molecular (MeSH)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Promoter Regions, Genetic (genetics)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
<term>Stress, Physiological (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Annotation de séquence moléculaire (MeSH)</term>
<term>Capsicum (génétique)</term>
<term>Capsicum (physiologie)</term>
<term>Chlorophylle (métabolisme)</term>
<term>Duplication de gène (MeSH)</term>
<term>Génomique (MeSH)</term>
<term>Modèles moléculaires (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régions promotrices (génétique) (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Stress physiologique (génétique)</term>
<term>Structure tertiaire des protéines (MeSH)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Chlorophyll</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsicum</term>
<term>Promoter Regions, Genetic</term>
<term>Stress, Physiological</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Capsicum</term>
<term>Protéines végétales</term>
<term>Régions promotrices (génétique)</term>
<term>Stress physiologique</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Chlorophylle</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Conserved Sequence</term>
<term>Gene Duplication</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genomics</term>
<term>Models, Molecular</term>
<term>Molecular Sequence Annotation</term>
<term>Phylogeny</term>
<term>Protein Structure, Tertiary</term>
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<term>Duplication de gène</term>
<term>Génomique</term>
<term>Modèles moléculaires</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Structure tertiaire des protéines</term>
<term>Séquence conservée</term>
<term>Séquence d'acides aminés</term>
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<front><div type="abstract" xml:lang="en">The dirigent (DIR and DIR-like) proteins involved in lignification, play a pivotal role against biotic and abiotic stresses in plants. However, no information is available about DIR gene family in pepper (Capsicum annuum L.). In this study, 24 putative dirigent genes (CaDIRs) were identified, their gene structure, genome location, gene duplication and phylogenetic relationship were elucidated. Tissue-specific expression analysis displayed the highest transcription levels in flower, stem and leaf. Some CaDIRs were up-regulated by virulent (CaDIR2, 3, 6, 7, 11, 14, 16, 22 and 23) and avirulent (CaDIR3, 5, 7, 16, 20, 22, 23 and 24) Phytophthora capsici strains, as well as by Methyl jasmonate, salicylic acid, NaCl and mannitol stresses. Acid-soluble lignin content increased (103.21%) after P. capsici inoculation (48-hour). Silencing of CaDIR7 weakened plant defense by reducing (~50%) root activity and made plants more susceptible (35.7%) to P. capsici and NaCl (300 mM). Leaf discs of the CaDIR7:silenced plants exposed to NaCl and mannitol (300 mM each), exhibited a significant decrease (56.25% and 48% respectively) in the chlorophyll content. These results suggested that CaDIR7 is involved in pepper defense response against pathogen and abiotic stresses and the study will provide basic insights for future research regarding CaDIRs.</div>
</front>
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<Abstract><AbstractText>The dirigent (DIR and DIR-like) proteins involved in lignification, play a pivotal role against biotic and abiotic stresses in plants. However, no information is available about DIR gene family in pepper (Capsicum annuum L.). In this study, 24 putative dirigent genes (CaDIRs) were identified, their gene structure, genome location, gene duplication and phylogenetic relationship were elucidated. Tissue-specific expression analysis displayed the highest transcription levels in flower, stem and leaf. Some CaDIRs were up-regulated by virulent (CaDIR2, 3, 6, 7, 11, 14, 16, 22 and 23) and avirulent (CaDIR3, 5, 7, 16, 20, 22, 23 and 24) Phytophthora capsici strains, as well as by Methyl jasmonate, salicylic acid, NaCl and mannitol stresses. Acid-soluble lignin content increased (103.21%) after P. capsici inoculation (48-hour). Silencing of CaDIR7 weakened plant defense by reducing (~50%) root activity and made plants more susceptible (35.7%) to P. capsici and NaCl (300 mM). Leaf discs of the CaDIR7:silenced plants exposed to NaCl and mannitol (300 mM each), exhibited a significant decrease (56.25% and 48% respectively) in the chlorophyll content. These results suggested that CaDIR7 is involved in pepper defense response against pathogen and abiotic stresses and the study will provide basic insights for future research regarding CaDIRs.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Khan</LastName>
<ForeName>Abid</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Ru-Jian</ForeName>
<Initials>RJ</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sun</LastName>
<ForeName>Jian-Tian</ForeName>
<Initials>JT</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Fang</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Huai-Xia</ForeName>
<Initials>HX</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jin</LastName>
<ForeName>Jing-Hao</ForeName>
<Initials>JH</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ali</LastName>
<ForeName>Muhammad</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Haq</LastName>
<ForeName>Saeed Ul</ForeName>
<Initials>SU</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Jun-E</ForeName>
<Initials>JE</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Shanxi Agricultural University, Taigu, 030801, Shanxi, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gong</LastName>
<ForeName>Zhen-Hui</ForeName>
<Initials>ZH</Initials>
<AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China. zhgong@nwsuaf.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>04</Month>
<Day>03</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Sci Rep</MedlineTA>
<NlmUniqueID>101563288</NlmUniqueID>
<ISSNLinking>2045-2322</ISSNLinking>
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<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
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<Chemical><RegistryNumber>1406-65-1</RegistryNumber>
<NameOfSubstance UI="D002734">Chlorophyll</NameOfSubstance>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002734" MajorTopicYN="N">Chlorophyll</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D023281" MajorTopicYN="Y">Genomics</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008958" MajorTopicYN="N">Models, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011401" MajorTopicYN="N">Promoter Regions, Genetic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017434" MajorTopicYN="N">Protein Structure, Tertiary</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Ali, Muhammad" sort="Ali, Muhammad" uniqKey="Ali M" first="Muhammad" last="Ali">Muhammad Ali</name>
<name sortKey="Gong, Zhen Hui" sort="Gong, Zhen Hui" uniqKey="Gong Z" first="Zhen-Hui" last="Gong">Zhen-Hui Gong</name>
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<name sortKey="Li, Ru Jian" sort="Li, Ru Jian" uniqKey="Li R" first="Ru-Jian" last="Li">Ru-Jian Li</name>
<name sortKey="Ma, Fang" sort="Ma, Fang" uniqKey="Ma F" first="Fang" last="Ma">Fang Ma</name>
<name sortKey="Sun, Jian Tian" sort="Sun, Jian Tian" uniqKey="Sun J" first="Jian-Tian" last="Sun">Jian-Tian Sun</name>
<name sortKey="Wang, Jun E" sort="Wang, Jun E" uniqKey="Wang J" first="Jun-E" last="Wang">Jun-E Wang</name>
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Genome-wide analysis of dirigent gene family in pepper (Capsicum annuum L.) and characterization of CaDIR7 in biotic and abiotic stresses.

Genome-wide analysis of dirigent gene family in pepper (Capsicum annuum L.) and characterization of CaDIR7 in biotic and abiotic stresses.

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